rs108619893 SNP Detail

Summary

• ID
  rs108619893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5892033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCGCAGG CCGGACCGGC
  CGTTCGGCTC CGCGGCGCCG TGGCGAGGCC GAAGCGCCCC GACGCGTCGC TCGCGAGCTC
  CCCCCACCCC TCACCCCGCG ACCTCGGGCA CCAGAGCGGG GTCACGCCGA GCGCTGGGGT
  CCGCTCCCCC TGGGCGGCGG CGGCTCCGCA AAGTTTGCAC CTGAGCGGAG ACGGGCGCCC
  S
  GGCACGCGGA GTTCCCGTAG CCCCGGAGCA GCGCGCGGGC CACTCGGACG CTGCCGCTCC
  GCACTGAGCC TGGCGCCTGC CTCCTTCCTC CGTACGGCAG CCCGGCGCTC GAGCCGGGCG
  GGGAGGACGC TGCAGCCTCC GGGAGTCACG CTCCCTCCGC GTCCACTGCC TTCCAGGCTC
  TCATTTTTTC CTTTTGGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130471289	NCBIM37_NT_039636_chr17_5841758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108619893					SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130471289	NCBIM37_NT_039636_chr17_5841758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5892033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8560	CpG island 8560	614 bp distal
Cpgi8561	CpG island 8561	within coordinates
Gm65455	predicted gene, 65455	1855 bp downstream
Gm65471	predicted gene, 65471	within coordinates
Snx9	sorting nexin 9	within coordinates
Tssr142439	transcription start site region 142439	487 bp downstream
Tssr142440	transcription start site region 142440	381 bp downstream
Tssr142441	transcription start site region 142441	348 bp downstream
Tssr142442	transcription start site region 142442	295 bp downstream