rs108623101 SNP Detail

Summary

• ID
  rs108623101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172195785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACTTGGG GTTAAGAGAG ACAGTAGTGA AATTGAAGAC
  ACATACACAT CTTAAGCAGT ACTATCCTAG AAAGATTTCA GTGGGATATA TTTTTTTTGC
  Y
  TTAATGTTCA TTCGAAGGGA GGGGTTTTTA TTATAAGTTA GGTATCTCCA CAGGAGTGGT
  TGTGTGGGTG GGTGGGTGGA GGTGTGGGAG TGGGTGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009823	PARCsnp_1.18990	PARC_SEQ	INBRED	f	SNP	T	C
ss120013108	PARCsnp_1.08821	PARC_SEQ	INBRED	f	SNP	T	C
ss320124573	CHEV_1_174298349	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108623101					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172195785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	711 bp proximal
Cpgi1046	CpG island 1046	1566 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	750 bp proximal