rs108627262 SNP Detail

Summary

• ID
  rs108627262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24658185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGAGAGG CTGACATCCA
  GAATTTCACC AGTTTCATCT CCAAAGACTC CATCCAGAAG TCCCTACACA TGTACTTGGA
  AAAGCTCAAG CAAAAGAAGG GCTAACCTAG GTGGACTTCT GAGTTCGAGG CCAGCCTGGT
  CTACAGAGTG AGTTCCAGGA CAGCCAGGGG TATACAGAGA AACCCTGTTT TGAAAAAAAA
  W
  AATAAAAAAA TAAAAATAAG GGCTAACCTA CAGCTGCCAC ATATGTGCCT TCTAGGGACC
  CACTGGTCCC AAAGATTATA TATAAACAAG GTATTCTTCA ACTTCAAAAC TCTCTTAGCT
  CTTGTGTTCC TAACCTTAAA ATGTCCTGTT TCAGGAATGG AGAAATAGGT CAGTGATTAA
  GAACACTAGC TGCTGTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ
ss130550159	NCBIM37_NT_039649_chr17_24576156	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PL/J	PWK/PhJ	SPRET/EiJ
rs108627262					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130550159	NCBIM37_NT_039649_chr17_24576156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24658185 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	869 bp downstream
Eci1	enoyl-Coenzyme A delta isomerase 1	within coordinates
Tssr146730	transcription start site region 146730	1184 bp downstream