rs108628600 SNP Detail

Summary

• ID
  rs108628600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30213992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGAGGC AACAAGGAAT
  CATGGGAGTT ACAGGCAGAG GGGACATGGC AACAGGTTCT CTATCATGTG GACGGTGAGC
  CAAATTAAAG GCAGCCATAC CAGCATAGCT TGTTTCAGTT TCAAACAGTG GCAAATACTA
  TGAACAAGTT AGGGGAAACT TCTTGATGCA TATTGTTAAG TAACAAGGCG AGACAACCAT
  Y
  TAAAACTGAA TGGAGCCAGC CTCGACAGTC CAGGTGATGT CTAAAGGGAG ACGTTCTGAA
  GGGCCTTCAG GTATGGGGCT CAGGGAAGAG CCTGGAAGTA GTCATGGTGA ACACGGGACG
  ACAGTTAGAG ATGCGGAACC GCGGTTAAGA GGGTCCAGGA TGGCATGGCT GGGAGTTGGG
  AGAGATGGCT GAACGGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148681160	ENSMUSSNP4696267	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108628600					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30213992 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	555 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1165 bp downstream
Tssr2186	transcription start site region 2186	662 bp upstream
Tssr65778	transcription start site region 65778	578 bp upstream