rs108630065 SNP Detail

Summary

• ID
  rs108630065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44463707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCCACCT GCCAATGAAC
  TAATCAACTC ACCAACCAAT CAGTGAACAA GCCAATCAAT GATTCAAATC AATCAGCCAA
  CCACTCAGTG AAGCAGTCAC CCAACTAACG GTCCACCCAA CAAAGGTCTG CTCCCACGTC
  TGTAATCCTG CTCTGTGGCT GCTTGACTGC ACCCCATACC TATGTCTTCT CTCCTTTCCT
  Y
  GCTTGTTCAG TTATTATTGG TGATAGAGAC TTGTGTAGAC TAGGCTGGCC TTGGACCTGC
  TTTGTAGTCC GTGGCTGAGG ACAACCTTAA ACATCTGACT CTCCCAGAGT GCTAGGACTA
  TTCACCACTC TCTCTCCTCC CTTTCCTGCA CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTATG ACTCGCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149122989	ENSMUSSNP1739138	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108630065					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44463707 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	1466 bp proximal
Nup62	nucleoporin 62	1805 bp upstream
Rr400297	regulatory region 400297	1489 bp upstream
Rr646219	regulatory region 646219	1365 bp proximal
Tssr66425	transcription start site region 66425	943 bp downstream
Tssr66426	transcription start site region 66426	1646 bp upstream
Tssr72229	transcription start site region 72229	939 bp upstream
Tssr72230	transcription start site region 72230	1336 bp downstream
Tssr72231	transcription start site region 72231	1381 bp downstream
Tssr72232	transcription start site region 72232	1626 bp downstream