rs108631611 SNP Detail

Summary

• ID
  rs108631611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACCTCAG GGCTCATGGG CGTGGGTCTA TGTGGAAGAG
  GAGAAGGATT GTTTAAGAGC CAGGGGTGAT AAACGGCTTC CAATAAGCAG TTTTTCAGGG
  R
  TTGTGTCAGT ATGCACAAGA CCCACAAAAG CTCAAGCCAT ACAAAACACA GAGAAGGGGG
  AGTGGGCACA AAAGACCCAA CTGTAGCCAA AACTATTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148095642	ENSMUSSNP5215400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320585261	CHEV_2_157104124	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108631611					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	433 bp proximal
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	710 bp upstream
Rr397441	regulatory region 397441	360 bp upstream
Rr568459	regulatory region 568459	181 bp proximal
Rr568460	regulatory region 568460	1151 bp proximal
Tssr21228	transcription start site region 21228	610 bp upstream
Tssr21229	transcription start site region 21229	638 bp upstream
Tssr21230	transcription start site region 21230	677 bp upstream
Tssr21231	transcription start site region 21231	890 bp upstream
Tssr27165	transcription start site region 27165	1124 bp downstream
Tssr27166	transcription start site region 27166	1131 bp downstream
Tssr27167	transcription start site region 27167	1168 bp downstream