rs108634309 SNP Detail

Summary

• ID
  rs108634309
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40155349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGTGCT TCTCGGGCTG TGTGGTTGTG TCGCCTCGCC
  CCCCCTTCCC GCGGCAGCGT TCCCACGGCT GGCGAAGTCG CGGGAGTCCT CCTTCCCCTC
  C
  TCGGGGTCGA GAGGGTCCGT GTCTGGCGTT GATTGATCTC GCTCTCGGGG ACGGGACCGT
  TCTGTGGGAG AACGGCTGTT GGCCGCGTCC GGCGCGACG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385438	CHEV_17_39981403	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108634309					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40155349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	713 bp proximal
Rn18s-rs5	18s RNA, related sequence 5	1896 bp upstream
Rr331227	regulatory region 331227	749 bp distal
Rr331228	regulatory region 331228	within coordinates
Rr331229	regulatory region 331229	652 bp proximal
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	1889 bp upstream
Tssr144603	transcription start site region 144603	1994 bp upstream
Tssr148051	transcription start site region 148051	1129 bp upstream
Tssr148052	transcription start site region 148052	915 bp upstream
Tssr148053	transcription start site region 148053	809 bp upstream
Tssr148054	transcription start site region 148054	297 bp upstream
Tssr148055	transcription start site region 148055	48 bp upstream
Tssr148056	transcription start site region 148056	259 bp downstream
Tssr148057	transcription start site region 148057	664 bp downstream
Tssr148058	transcription start site region 148058	1285 bp downstream
Tssr148059	transcription start site region 148059	1320 bp downstream
Tssr148060	transcription start site region 148060	1441 bp downstream
Tssr148061	transcription start site region 148061	1550 bp downstream