rs108635729 SNP Detail

Summary

• ID
  rs108635729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTTGCT GGGACTTGAA
  CTCAGGACCT TCGGAAGAGC AATCAATGCT CTTAACCACC GAGCCATCTC TCCAGCCCGG
  CAAGATCTCT CTTGTTCACT GTTATATATG TCAGGCAAGC AGTCTCAAAC TTCTATAGAG
  TCTCCTGTGT GTGCCTCCAT CCTGCTGTAA GAACGCTGGG ATTACAGATA TGTACCATAG
  Y
  ACCTCATGCT TATGTGGTTA AGAGCTCTAC CCTTTGAGTC ATCTCCCCTC ATTCATCAAA
  TGCCACTTGA ACTACATGTC CTCTGGAGGT GCTCCTGACT CCTAATTCTT ACTCTTTGCT
  GGATTTCCAG TAACTAACAT CTATTTTGTA CCTCTTATCC TCATCCTTGA ATCATGTTGG
  TGTTAATGAA ACACTTTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147623011	ENSMUSSNP6787772	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320509805	CHEV_2_132639976	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108635729					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	1386 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1901 bp upstream
Rr397334	regulatory region 397334	1698 bp upstream
Rr565537	regulatory region 565537	1804 bp proximal
Rr565538	regulatory region 565538	1912 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1897 bp upstream
Tssr20336	transcription start site region 20336	1908 bp upstream
Tssr20337	transcription start site region 20337	1929 bp upstream
Tssr26490	transcription start site region 26490	1738 bp downstream