rs108639723 SNP Detail

Summary

• ID
  rs108639723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCAGCT ATGTGTGAGT
  GTTTTATCGG CATGTATGTC TATGTATTGT GGGTGTAGTG CCTAAGGAGG TCAGAGGAGA
  ACATCAGATC CTCTAGAACA GTAGTTACAG TCGGTTGTGG GTTGCCATCT TGGCTGCTAG
  GAATTGAGTG CAGCTCCTCT GCGGGAGTTT TTAACTGCTG AGCCATCTCT CCAGCCCTGC
  Y
  AGGTCCCTTT CAAGGCCAAT ACAATTCATA TAGTTAACAG AAATGTACTT TAGATACACT
  TTTGCATTAG GTTTCTGCCG TTTTCCGTGG CTCTTTTTCC AGTACCACAT CCTGTCTCTT
  GTGTTTCCTT TTTCTATTCT TTAAATGTAT CTATACCCTA AGCTTATGAG TCCTCAGATT
  TCTAGAGATT TGCGTTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148003994	ENSMUSSNP2311812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320565082	CHEV_2_153606420	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108639723					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1330 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	951 bp upstream
Rr567738	regulatory region 567738	962 bp distal
Rr567739	regulatory region 567739	861 bp distal
Tssr20916	transcription start site region 20916	1449 bp downstream
Tssr20917	transcription start site region 20917	1433 bp downstream
Tssr20918	transcription start site region 20918	1405 bp downstream