rs108642169 SNP Detail

Summary

• ID
  rs108642169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66963722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGATTTCT TCAGCCAAAA TAAGGGGCGA GCTTCCAGGA
  GCGTTCCTTA ACTGCTGTCT TGACAGCTCC CCGCGGATTG TTACTAGAAG CTGAGATTAT
  K
  CCCCCCCTAG TGTTTATATT CTTTAAGTCC TGAGGTCTTT TAATTTTTCT ACTTTCATTT
  ACGTAAAGAA CTTGTCCAAC TTCAACAGTC CTTCATCAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145053551	ENSMUSSNP4029531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108642169					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66963722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	541 bp proximal
Gm63911	predicted gene, 63911	48 bp upstream
Tktl2	transketolase-like 2	686 bp upstream
Tssr77575	transcription start site region 77575	662 bp upstream
Tssr77576	transcription start site region 77576	681 bp upstream