rs108644554 SNP Detail

Summary

• ID
  rs108644554
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88277085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGCAGA GGCTTGGTTT
  TGCCAGCTGC TGATAGTTTC TGCGATTGCG TGGCATTTGG AATTCTGGGA AATTTTCCAG
  AGAGTATATA AAGTCCTGAT AGGTGGGTTG TTGGTTTGTT GGTCCAAGGA ACTCAATACC
  CTTAATCATC AGGAAGTAAT CTAGTGATAT ACATTCCAAC CCTGAATCAA AATTAGGGTT
  W
  TTCTGGGGTC TCCTTTCCTC TCTATCCTTT TTTCTCTTTC ATCTAGTGTT ATGGGGCTGA
  AAGGGTGGAA TGAAAGGAGG TGAGAAGCCA ATTTTGAATT ATCCACTGTT AAGGCCCAGG
  TAACTGCTAC CTGTCTAGCC TGCTATTTCA TGCTGTTACT AATGTCAGAA GGAAGCTTTC
  TCATATGCTG TTATTGCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500513	CHEV_17_88368997	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108644554					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88277085 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	437 bp upstream
Rr532782	regulatory region 532782	641 bp distal
Rr532783	regulatory region 532783	899 bp distal