rs108649345 SNP Detail

Summary

• ID
  rs108649345
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4839378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTTCT TCCCAGAATA
  TCTCCCTTTA ACTCTTTTTT AATGTGTTAT TATGTGTGGC CATGATGTTG GAGAATTGCC
  TTGGTACACA CGTGGAGGCC ATGTGGAGTT GGCCTCTGCT TCCACCTTCG CCATGGGTTC
  CAGGAAGTGA ACTCAGATCA ATAGGCTTGC CTGGAAAAGA GCTTTAGGCA CTGAGCCATG
  C
  CATCGACCCT GTATAGTTCA AGGATGAATG TCAACCAGGC TTAGTGACGC ATGTTTGCAA
  TCCTAGCCCT CTAGAAACAG AATCAAGTTC AAGTCTAACT TAGAGTATGT AGTATTTTTC
  TAAAAAAAAA AAAAAAAAAT CCTGTGCTTA ATGGCGATCC CTTTCACTAG CACATCGGTC
  CATATATCCC TTCTTCCGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148476105	ENSMUSSNP159896	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108649345					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4839378 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	1976 bp upstream
Rr407421	regulatory region 407421	485 bp distal
Rr407422	regulatory region 407422	592 bp distal
Rr407423	regulatory region 407423	803 bp proximal
Rr407424	regulatory region 407424	900 bp proximal
Tssr5799	transcription start site region 5799	1939 bp upstream