rs108649506 SNP Detail

Summary

• ID
  rs108649506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65141528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC ATAACATGAA CAGTCATCAC
  Y
  GTGCTATACA GTAGATGTCT AGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149170523	ENSMUSSNP5033517	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss319746481	CHEV_1_65148943	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108649506					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65141528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	579 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	1717 bp downstream
Tssr7112	transcription start site region 7112	1971 bp downstream
Tssr7113	transcription start site region 7113	1853 bp downstream
Tssr7114	transcription start site region 7114	1839 bp downstream
Tssr7115	transcription start site region 7115	1827 bp downstream
Tssr7116	transcription start site region 7116	1765 bp downstream
Tssr7117	transcription start site region 7117	1726 bp downstream
Tssr7118	transcription start site region 7118	1673 bp downstream
Tssr7119	transcription start site region 7119	677 bp upstream
Tssr11968	transcription start site region 11968	1922 bp upstream
Tssr11969	transcription start site region 11969	1899 bp upstream
Tssr11970	transcription start site region 11970	1731 bp upstream
Tssr11971	transcription start site region 11971	1707 bp upstream
Tssr11972	transcription start site region 11972	1686 bp upstream
Tssr11973	transcription start site region 11973	638 bp downstream
Tssr11974	transcription start site region 11974	713 bp downstream
Tssr11975	transcription start site region 11975	780 bp downstream
Tssr11976	transcription start site region 11976	994 bp downstream