rs108653091 SNP Detail

Summary

• ID
  rs108653091
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57529782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACAAAA GCAGGCAGAA
  GTCTGTGAGT CTGTGAGCCC AGCCTAGGCT AGTCTACATA TTGAATTTTC AGGACAGTCA
  GAGCTGCATG GAGAGACTCT GTCTTTAAAA AAGGAAAGGG GGTAGGGAGA GAAAGAGAGA
  GAGAGAAAGA AAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  K
  ACTCACCGTG CCAATACAGG AATCCTTCAC ATCCACCCAC ACAGAGTCAG CCACCACCTC
  CCTCTGGCCA CTAGCTCCAA TCAGGGTGTA GTAAGCCACC AGGCGAAATG AAGGAATAAA
  CTCTGGAGTG ATGGGCAGGG ACAAGACCAC CAGGTCCTGG CCAGGCTCCC GAACCTGGCG
  GCCTGCCTTC AGGAGCTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130940612	NCBIM37_NT_039649_chr17_57362205	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108653091					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130940612	NCBIM37_NT_039649_chr17_57362205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57529782 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1540 bp proximal
Gm65552	predicted gene, 65552	1272 bp downstream
Tssr145377	transcription start site region 145377	551 bp downstream
Tssr145378	transcription start site region 145378	330 bp upstream
Tssr145379	transcription start site region 145379	411 bp upstream
Tssr145380	transcription start site region 145380	440 bp upstream
Tssr145381	transcription start site region 145381	506 bp upstream
Tssr145382	transcription start site region 145382	1036 bp upstream
Tssr145383	transcription start site region 145383	1152 bp upstream
Tssr145384	transcription start site region 145384	1285 bp upstream
Tssr148935	transcription start site region 148935	1730 bp upstream
Tssr148936	transcription start site region 148936	1709 bp upstream
Tssr148937	transcription start site region 148937	1688 bp upstream
Tssr148938	transcription start site region 148938	1382 bp upstream
Tssr148939	transcription start site region 148939	853 bp upstream
Tssr148940	transcription start site region 148940	509 bp upstream
Tssr148941	transcription start site region 148941	436 bp upstream
Tssr148942	transcription start site region 148942	49 bp downstream
Tssr148943	transcription start site region 148943	89 bp downstream
Tssr148944	transcription start site region 148944	109 bp downstream
Tssr148945	transcription start site region 148945	137 bp downstream
Tssr148946	transcription start site region 148946	162 bp downstream
Tssr148947	transcription start site region 148947	401 bp downstream
Tssr148948	transcription start site region 148948	453 bp downstream
Tssr148949	transcription start site region 148949	508 bp downstream
Tssr148950	transcription start site region 148950	1073 bp downstream
Tssr148951	transcription start site region 148951	1114 bp downstream
Tssr148952	transcription start site region 148952	1155 bp downstream
Tssr148953	transcription start site region 148953	1339 bp downstream
Tssr148954	transcription start site region 148954	1390 bp downstream
Tssr148955	transcription start site region 148955	1537 bp downstream
Tssr148956	transcription start site region 148956	1570 bp downstream