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rs108653299 SNP Detail
Summary
  • ID
    rs108653299
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr17:49345007 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGAGTTGAG AACAGTGTGC
    CAAACTGTCA AACGATGCTC AGGGTTGTGA CCCACACATC CATCGGGAGG AGGCAGGGTG
    GTCCACCTGT ATTCTGATGA CAGAGCAGGT AGCAGTGTGG GTCCACAGTA GATATAAGAC
    AGGAGATTGT GTGTGCAGAG TCATTCCTCA AGAACTGCCC ATGCGTGTGT GTGTGTGTGT
    G
    TGTGTGTGTG TGTGTGTGTG TGCGCGAGTG CAGTTATTCC TCAAGTACTG TCCATGTGTG
    TATGTGTGTG TGTCCACGCG TGTGAGCGAG CGAGCACACA CATGCGTGCG TGCTCCTGAG
    TGTATGTGAG AACTTAGGAC TGTAAACTAA AGCATGAGAG AAACATTGGG TGTTCTGCTC
    CATAGTTCTC CACTTTATTC                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
ss130885338 NCBIM37_NT_039649_chr17_49177304 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
rs108653299 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss130885338 NCBIM37_NT_039649_chr17_49177304 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:49345007 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lrfn2 leucine rich repeat and fibronectin type III domain containing 2 within coordinates
Rr337874 regulatory region 337874 295 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory