rs108653784 SNP Detail

Summary

• ID
  rs108653784
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:20972293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGACAGTAGA CCAGTCAATC TTTTTAAGGC TCCCATGTAC
  AAATATGCTG TATGAGGTAG CAGCTGAGGT CAGACATTCT GTATGGCTTC TGGTATTTTA
  C
  CAGCACTGCC TGTGAATAAA TTCAGCCTTC AAAAATAGCT GTACCAGTGG GTAGCTTTTA
  TTCCTGCATT AGGCAATAAA CTGCAATCCC AAAACTCTGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137287040	ENSMUSSNP6781581	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108653784					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:20972293 () rs orientation: forward

Symbol	Name	Function Class
3110053B16Rik	RIKEN cDNA 3110053B16 gene	1030 bp upstream
Cpgi4472	CpG island 4472	768 bp distal
Rr463638	regulatory region 463638	1248 bp distal
Rr463639	regulatory region 463639	540 bp distal
Rr463640	regulatory region 463640	802 bp distal
Rr463641	regulatory region 463641	755 bp distal
Tssr115849	transcription start site region 115849	1209 bp upstream
Tssr115850	transcription start site region 115850	1056 bp upstream
Tssr115851	transcription start site region 115851	1019 bp upstream