rs108657370 SNP Detail

Summary

• ID
  rs108657370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124193972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCGAGCGGGC CGGGGCGGCG TCAGGGGTTC CGCGAGGAAG
  GGGCCCGTGC GCACTGGATG TCATCCCCTG GCCTCAGGGT TTACTCGCGG GCTCGAGGTC
  Y
  CGGGGCCGGT GGAGGGGAGG CGGCGGGGGT GGAGGATTTT ACTCACAAGC AACCCCCGGA
  CGCGCACCTC ATATGATTAT CAGTCCTTTT TGTGTCTTAA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134041070	ENSMUSSNP612944	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108657370					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124193972 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	1153 bp downstream
Gm20783	predicted gene, 20783	1451 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	1440 bp upstream
Rr689518	regulatory region 689518	51 bp distal
Rr689519	regulatory region 689519	950 bp proximal
Rr689520	regulatory region 689520	1818 bp proximal
Rr689521	regulatory region 689521	1934 bp proximal
Tssr3098	transcription start site region 3098	1939 bp upstream
Tssr3099	transcription start site region 3099	1836 bp upstream
Tssr3100	transcription start site region 3100	1811 bp upstream
Tssr3101	transcription start site region 3101	1699 bp upstream
Tssr3102	transcription start site region 3102	1556 bp upstream
Tssr3103	transcription start site region 3103	1514 bp upstream
Tssr3104	transcription start site region 3104	1422 bp upstream
Tssr3105	transcription start site region 3105	1312 bp upstream