rs108657540 SNP Detail

Summary

• ID
  rs108657540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31425895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA AAGAAAAGAA AGAAAAGAGA
  Y
  GAGACGAGTC GAGACGAGAC GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145458067	ENSMUSSNP381562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325358914	CHEV_17_31343866	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108657540					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31425895 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	505 bp proximal
Rr370213	regulatory region 370213	1764 bp downstream
Rr370214	regulatory region 370214	900 bp upstream
Tssr143654	transcription start site region 143654	1128 bp upstream
Tssr147277	transcription start site region 147277	1876 bp downstream
Tssr147278	transcription start site region 147278	1892 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	952 bp upstream