rs108657898 SNP Detail

Summary

• ID
  rs108657898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113879179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA CTCCTGCCTC AGTTTCTGAG
  Y
  ACTGGGATTG CAGGTGTGAG CTAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245810	ENSMUSSNP3910197	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108657898					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113879179 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	within coordinates
Tssr600	transcription start site region 600	1129 bp upstream
Tssr601	transcription start site region 601	1118 bp upstream
Tssr602	transcription start site region 602	1779 bp downstream
Tssr19429	transcription start site region 19429	1401 bp downstream
Tssr19430	transcription start site region 19430	1291 bp downstream
Tssr19431	transcription start site region 19431	1207 bp downstream
Tssr19432	transcription start site region 19432	1124 bp downstream
Tssr19433	transcription start site region 19433	534 bp downstream
Tssr19434	transcription start site region 19434	490 bp downstream
Tssr19435	transcription start site region 19435	471 bp upstream
Tssr19436	transcription start site region 19436	852 bp upstream
Tssr19437	transcription start site region 19437	1587 bp upstream
Tssr19438	transcription start site region 19438	1670 bp upstream
Tssr19439	transcription start site region 19439	1735 bp upstream
Tssr25660	transcription start site region 25660	1380 bp upstream
Tssr25661	transcription start site region 25661	1359 bp upstream
Tssr25662	transcription start site region 25662	1256 bp upstream
Tssr25663	transcription start site region 25663	1230 bp upstream
Tssr25664	transcription start site region 25664	1189 bp upstream
Tssr25665	transcription start site region 25665	1081 bp upstream
Tssr25666	transcription start site region 25666	527 bp upstream
Tssr25667	transcription start site region 25667	484 bp upstream
Tssr25668	transcription start site region 25668	457 bp upstream
Tssr25669	transcription start site region 25669	394 bp upstream
Tssr25670	transcription start site region 25670	503 bp downstream
Tssr25671	transcription start site region 25671	546 bp downstream
Tssr25672	transcription start site region 25672	615 bp downstream
Tssr25673	transcription start site region 25673	650 bp downstream
Tssr25674	transcription start site region 25674	854 bp downstream
Tssr25675	transcription start site region 25675	902 bp downstream
Tssr25676	transcription start site region 25676	939 bp downstream
Tssr25677	transcription start site region 25677	966 bp downstream
Tssr25678	transcription start site region 25678	1638 bp downstream
Tssr25679	transcription start site region 25679	1647 bp downstream
Tssr25680	transcription start site region 25680	1660 bp downstream
Tssr25681	transcription start site region 25681	1707 bp downstream
Tssr25682	transcription start site region 25682	1789 bp downstream
Tssr25683	transcription start site region 25683	1796 bp downstream
Tssr25684	transcription start site region 25684	1887 bp downstream