rs108660004 SNP Detail

Summary

• ID
  rs108660004
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119229253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTTATTTATT TATTTAGTTA
  K
  TTAGTTGTTG TTTTTTTCGA GACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137047076	ENSMUSSNP839121	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs108660004					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119229253 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	1931 bp upstream
Cpgi22474	CpG island 22474	1415 bp proximal
Gm53515	predicted gene, 53515	138 bp downstream
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	1030 bp proximal
Rr688481	regulatory region 688481	1271 bp proximal
Rr688482	regulatory region 688482	1776 bp proximal
Tssr87682	transcription start site region 87682	1894 bp upstream
Tssr87683	transcription start site region 87683	1969 bp upstream