rs108660786 SNP Detail

Summary

• ID
  rs108660786
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:67423364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTGCAGA GAACCCAGGT TTAGTCCACA GCACTCAAAA
  TGGGAACCTT ACAACTGCCT ATAACTCTAA CTTCAGCACA CACATGACAC ACACGCACAC
  G
  CACACGCACA CACACACACA CATGCACACA CACATAGACA CTCGTTTTTG CCACCGAAAA
  CGCAAAAATA ATACAACATT AATATTCCTA GTTATATCT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146721240	ENSMUSSNP6629811	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320326846	CHEV_2_67431077	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108660786					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67423364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr558222	regulatory region 558222			500 bp distal