rs108661362 SNP Detail

Summary

• ID
  rs108661362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGGGCT GAACAAATAT
  GGAAGAGTTA TAGTGAAATG AGTTTAATTG TTGTAACTGA ATGCTTCCGC ATCCATGGAG
  AGCTTTCAGG TCTGGTGAAT ATTACCTTTT AGAGACACTG TGGCTGGTTC AAAAAGAAAA
  CGGCCCACCT CATTGCTCGT AACGTGTCTG AGTCTTGGAA AGTATGCACT GGGAGGAAGG
  Y
  AGGAATAATA TGCACCGAGA GTGTCTATAT CCACATCACA TGCCTACTTC CTTATTGCCC
  TCAACCTACA GCTCTTGGAG TCCTCCAGAG TCTCAATTCC AAGGTAAGTT ATACAAAAGA
  AAGAGTGAAA AGGTGTGTTT GTGAAAATAA AAACAGATTT GTAGGCAGCT AGACTATCCG
  TTCATGCTTT TTAGTATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148902894	ENSMUSSNP1645387	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss324322197	CHEV_13_39160959	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108661362					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253066 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	54 bp upstream
Rr388296	regulatory region 388296	223 bp upstream