rs108665937 SNP Detail

Summary

• ID
  rs108665937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47818208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGCACA TTCAGACTCT
  CTCGGGGCTG GTGAGATGGC TCAGTGGGTA AGAGCACCCG ACTGCTCTTC CAAAGGTCTG
  GAGTTCAAAT CCCAGCAACC ACATGGTGGC TCAAAACCAT CTGTAATGAG ATCTGACTCC
  CTCTTCTGGA GTGTCTGCAG ACAGACTTAG ACTCTCTCAT CCTATGTCTC ACGAAGAACA
  S
  TGGACCTTGG AATCTGATTA AGAAGATGAT ATAGAAATGG GAGGAGCTTA AGGTGCTCTC
  CCCTCGAATC TCCCGTGTCA CTTCATGAAA AGCAGCACCC TTGGATCTAC TCCCTGCAAG
  TTGGAGACAG TGTCTGTGAG GGATGTGAGC CCCTCTACAG GGCAGCCTTC CTGAAGTCTA
  GTTGTTTTCT CTGCCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348138	MGP_WTSI_17_47644232	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	C	G	G	G	C	G	C	C	C	G	G	G	C	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108665937					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	C	G	G	G	C	G	C	C	C	G	G	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348138	MGP_WTSI_17_47644232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47818208 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	Intron
Cpgi9262	CpG island 9262	1938 bp distal
Rr370267	regulatory region 370267	681 bp upstream
Rr528024	regulatory region 528024	1382 bp distal
Rr528025	regulatory region 528025	within coordinates
Rr528026	regulatory region 528026	1805 bp proximal
Tssr144927	transcription start site region 144927	1004 bp upstream
Tssr144928	transcription start site region 144928	1910 bp upstream
Tssr148442	transcription start site region 148442	703 bp downstream