rs108667249 SNP Detail

Summary

• ID
  rs108667249
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTGTGG CGACCCAATT
  CTTCCCGATC CTGTGGACAG TCCTCCCTAA ACTTGATGTC CCGCTGCAGA AGTAGGCCGA
  CTAAAGGTCA ATTCACTCTT ACCCAACCAG AAAGCCCATA AAATTCCAAC CCAGTGGCAG
  ACTGCTTGCG TTGTACGCCA GAGGCCTTCG GTTCGAATTC CCATTATCAC TAATAATAAT
  M
  ATAATAATAA TAATAAAGGA AACAAGAACG CTCCCTTTTT CAGTTGACAG CCTACTAACT
  CGATCTGACT AGCCAGTGGC TGAAAGCGCA AAAGTTTGAG CCTAACGGTG TGTGTGGGTG
  AGGGGTAAAC ATGTTTAGGC ATAGCCAACC CTGAGGGTTT GGGCCGTGCG GTAGCCGAAC
  GGGAACCTGG AAACCAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss397861059	MGP_WTSI_17_24832533	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs108667249					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861059	MGP_WTSI_17_24832533	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	16 bp proximal
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	646 bp upstream
Rr523392	regulatory region 523392	108 bp proximal
Rr523393	regulatory region 523393	470 bp proximal
Rr523394	regulatory region 523394	931 bp proximal
Tssr5034	transcription start site region 5034	968 bp downstream
Tssr143060	transcription start site region 143060	688 bp upstream
Tssr143061	transcription start site region 143061	1072 bp upstream
Tssr146764	transcription start site region 146764	399 bp downstream
Tssr146765	transcription start site region 146765	477 bp downstream
Tssr146766	transcription start site region 146766	533 bp downstream
Tssr146767	transcription start site region 146767	559 bp downstream
Tssr146768	transcription start site region 146768	609 bp downstream
Tssr146769	transcription start site region 146769	917 bp downstream
Tssr146770	transcription start site region 146770	953 bp downstream
Tssr146771	transcription start site region 146771	981 bp downstream