rs108667729 SNP Detail

Summary

• ID
  rs108667729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:93885741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAAGG CGTCGTGCAC
  GCGTGCGTGT GGATGAGTGG AGGGGAAAGG AGTAATTTTT CCTCGGGCCA CCCCTTTAGA
  CTCGCGGATC GGCCACCCAA GGAAGGTGCA AGTGTGAGAC CAGGATTGCC ACCCCGTCGC
  CGGGCACTTA GCCAGCTGTT AGCGCCGCCT TTTCTGGGCC GCGCCCGCGG GTGACCTGCC
  M
  GGAGCCTCCG TGGAAACCAG CACTGCAGCC CTCCCTCCTT CCTTCTTTAC CGCGTCGGCC
  GCTCATCCTC GATCCCAGGC CCTGACACTC AACCTCGGAG CGGGTAGGCG CGACGCTTCT
  CGTGCACTCA CCACGGCTTA CCTTACCCCG GGAGCGCGCC GGTCTCTCGT GGGGACAGTC
  CCTGGAGGTG GCGACGCGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148576878	ENSMUSSNP1351302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108667729					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93885741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	within coordinates
Cpgi8494	CpG island 8494	1818 bp proximal
Gm31175	predicted gene, 31175	within coordinates
Gm49620	predicted gene, 49620	1016 bp upstream
Gm60844	predicted gene, 60844	within coordinates
Rr520040	regulatory region 520040	1027 bp distal
Rr520041	regulatory region 520041	526 bp distal
Rr520042	regulatory region 520042	within coordinates
Rr520043	regulatory region 520043	60 bp proximal
Rr520044	regulatory region 520044	210 bp proximal
Rr520045	regulatory region 520045	1878 bp proximal
Sim2	single-minded family bHLH transcription factor 2	222 bp upstream
Tssr139539	transcription start site region 139539	35 bp upstream
Tssr139540	transcription start site region 139540	344 bp upstream