rs108668275 SNP Detail

Summary

• ID
  rs108668275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGACATA GTGGAAACTC
  AATAGAAGTA GAAACTATTT TATAAACCTT ATATTATTTT TTAATTTAGG TTGGTTCTTT
  CTACATTTTA ATTTACTTGT AATTCATTCT TTATACTCCA TATTCCATTC CCAGCTCACC
  CTATCCACCC TGCAAATGCT CCTCCACCTC CCACACCTCC TCCCCACCCC ATTCTGTCTC
  Y
  ACTTGAATGC CCCCATCCCC CAGCACACCT GACCTCTAAA CTCCCTGGAG CCTCCAGTCT
  CTTGAGGGTT AGGTGCATCA TCTCTGAATG AACACAGACC TGGAAGTCCT CTAGTGGATA
  TGTGTTGGGG GCCTCATATC AGATAGTGTA TGCTGCATGT TTGGTGGTCC AGTGTTTGAA
  AGATCTTGGG GTCCAGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136057923	ENSMUSSNP1267387	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321014844	CHEV_3_147935956	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108668275					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978628 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	971 bp upstream
Rr587183	regulatory region 587183	526 bp distal
Rr587184	regulatory region 587184	224 bp distal