rs108670812 SNP Detail

Summary

• ID
  rs108670812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154494407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTCCACAG CATCCCAAGC CAATGTGAGC ATATGTGAAA
  ATGGAACTGG TAAATGGTCC AAGTCAAGAG GAAGAGTATG GAAGAGGAAG AAGAGAAGGG
  R
  AAGGGGAAGG GGAGGAGGAG GAGGGAATGA GAAGGGAAGG GGGTGCATGG AGAGAATGGG
  AGAGTAAGGA AGGGTAGGGG AGAAACGAGA AATATTCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145765789	ENSMUSSNP4125146	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108670812					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154494407 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	836 bp downstream
Rr420845	regulatory region 420845	629 bp distal
Rr420846	regulatory region 420846	321 bp proximal