rs108672159 SNP Detail

Summary

• ID
  rs108672159
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57403075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCATTT TAGACTGCCT
  TGCCGTTAAC CAGGTCCCAG GTGGACGAAG GAGTAAAGTA GTCTCTGAGG AAGGTCCGAT
  GGGAAACAAG CTTTCTTTCC TAGGCTGTTA GAGTCCGGTG GAATAGGGAG AACAGCGGGG
  GATGTGGGAA GGACCAGGGC GGGCTCTGGG AGGCTGATAG AGAAGTCTGT TAAGCCTACC
  S
  GGTAGGGCCT GAGCAGGGGG GGGGGGGGGG GCGGAGGGGG GTCTTTGGAG ATTGGCAGGG
  AAGCAGGCGA GGCAAGAGAA CTGAACCGCC TGGGAAGCTA AGGGAGCGGG AAGTAGGCTG
  GAAGAATGAC GTCAAAAGTG GGAATCCACA ACCTCGAGGA AGCTGTTGAC TGGGGAAAGT
  GGGCAGGGCG TAGAGAGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss398570500	MGP_WTSI_17_57235498	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs108672159					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398570500	MGP_WTSI_17_57235498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57403075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9395	CpG island 9395	512 bp proximal
Gm11110	predicted gene 11110	within coordinates
Gm46589	predicted gene, 46589	653 bp upstream
Gm56907	predicted gene, 56907	within coordinates
Rr529273	regulatory region 529273	1541 bp distal
Rr529274	regulatory region 529274	within coordinates
Rr529275	regulatory region 529275	671 bp proximal