rs108673880 SNP Detail

Summary

• ID
  rs108673880
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135694702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT ATAGAAAACC AGGGGCTTTG
  G
  TTTCTATCCC AAAGCTGGAC GATCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145545560	ENSMUSSNP6197273	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319993142	CHEV_1_137663541	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108673880					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135694702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	within coordinates
Gm70736	predicted gene, 70736	1969 bp downstream
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	17 bp downstream
Rr419269	regulatory region 419269	835 bp distal
Tssr223	transcription start site region 223	885 bp downstream
Tssr224	transcription start site region 224	763 bp downstream
Tssr8974	transcription start site region 8974	789 bp downstream
Tssr8975	transcription start site region 8975	756 bp downstream
Tssr8976	transcription start site region 8976	739 bp downstream
Tssr8977	transcription start site region 8977	724 bp downstream
Tssr8978	transcription start site region 8978	707 bp downstream
Tssr8979	transcription start site region 8979	845 bp upstream