rs108675023 SNP Detail

Summary

• ID
  rs108675023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95181398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACACTGT TTCCTACTTG
  ATATGGGGTC CTGGTTCCTA TATAATGCAA GTGCAGGGCT GGCAGGATGG CTCAGTGGGC
  AAAGGCTGCC AGTCTTGACA CCCTAGTTCA GTTCCTAAGA CCAACACAGT GGGAAGAGTT
  GGGAATCTTG CCAAGCTGTT CTCTGACCTT TACAGATGTG CTTGCTGCTG CAAGCTCCCA
  M
  CCCCCACCCC CCACAAAATG TATAAATAAA TGTTAAGAGT TTTTATTTTA TGGGCTAGAG
  AGATGGCTCA GGCATTGTTC TCCAGCTCCA GGGGACCCTA CGCCATCTTC TTGCTTCTGG
  GGGGCATCTC TACTCACATG CATATTCCCA CAGATAGATA CACACGTATA CATATAATTA
  AAAAATGTTT TTTGAGACAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135510410	ENSMUSSNP3724391	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108675023					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95181398 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	330 bp distal
Rr580882	regulatory region 580882	97 bp proximal
Rr580883	regulatory region 580883	556 bp proximal