rs108676019 SNP Detail

Summary

• ID
  rs108676019
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31425938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGGATGGGGC TCTGGATTCA ATCCCTGGCG CCACAAAAAG
  AAAAGAAAGA AAAGAGATGA GACGAGTCGA GACGAGACGA GACGAGACGA GACGAGAAGA
  G
  GAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG
  AAGAGAAGAG AAGAGAAGAG AAGAAGAGAG AAGAGAAGAG A                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145458084	ENSMUSSNP4560419	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108676019					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31425938 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	462 bp proximal
Rr370213	regulatory region 370213	1807 bp downstream
Rr370214	regulatory region 370214	857 bp upstream
Tssr143654	transcription start site region 143654	1085 bp upstream
Tssr147277	transcription start site region 147277	1833 bp downstream
Tssr147278	transcription start site region 147278	1849 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	909 bp upstream