rs108682867 SNP Detail

Summary

• ID
  rs108682867
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23591277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CATCCTCAGT TGTGTGGCTG AGTTCCAGGC TATGTTACAG
  AGACCCCTGC CACAAAAATA AATAAATAAA TAAATAAATA AATAAATAAA TAAATAAATA
  A
  ATAGATAGAT AAATAAATAA ATAAATAAAT AAATAAATAA ATAAAGCGAG GGAGGGAGGG
  AGAGGGGAGG GGAGAGGGGA GGGGAGAGGG GTGGGGGTGG G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148055946	ENSMUSSNP6519717	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108682867					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23591277 () rs orientation: forward

Symbol	Name	Function Class
4930580E04Rik	RIKEN cDNA 4930580E04 gene	830 bp upstream
5031425E22Rik	RIKEN cDNA 5031425E22 gene	within coordinates
Cpgi15578	CpG island 15578	654 bp proximal
Gm43058	predicted gene 43058	1341 bp downstream
Rr112206	regulatory region 112206	677 bp distal
Rr112207	regulatory region 112207	1924 bp proximal
Rr124896	regulatory region 124896	123 bp proximal
Rr367795	regulatory region 367795	606 bp upstream
Tssr45359	transcription start site region 45359	982 bp upstream
Tssr45360	transcription start site region 45360	994 bp upstream
Tssr45361	transcription start site region 45361	1021 bp upstream
Tssr50259	transcription start site region 50259	196 bp downstream
Tssr50260	transcription start site region 50260	606 bp downstream
Tssr50261	transcription start site region 50261	705 bp downstream
Tssr50262	transcription start site region 50262	754 bp downstream