rs108684073 SNP Detail

Summary

• ID
  rs108684073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:59737860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGCTGCT GTTGCCCTCA AGAAAAAACT
  TGCTCAGCAT CAATAAAGCT GATAAGTGGT AAAAATACAA TTATTAGACC CAGTGTATTC
  Tttttggttt ttccaggcag gatttgtctg tatagctctg gctgtcctgg aactcggtct
  R
  tagaccaggc tggtcttgaa ttcaaagatc caactgcctc tgcttccgag gtgctgggat
  taaaagagtg tgccacccca acctggctAT TGCCTATATT CTTTTAAAAA TGAAAACTTA
  TGGCAGGCTT TCTTTATATC TTCAGTGTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss149144603	ENSMUSSNP2608317	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		G
ss319739031	CHEV_1_59755545	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs108684073					SNP	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59737860 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	within coordinates
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	587 bp distal
Tssr6887	transcription start site region 6887	626 bp downstream
Tssr11836	transcription start site region 11836	922 bp upstream