rs108686879 SNP Detail

Summary

• ID
  rs108686879
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48663898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAATGGG TGGGTAGGGA
  AGTGGGGGGT AGGGTATGGG GGACTTTTGG GATAGCATTC TAAATATAAT TGAGGAAAAT
  ACGTAATAAT AAAAAATATT TTAAAAAACA GTTAGCAAAG AGACTACTTA TGGAAGCAGT
  GTCATCCCAA AGACAGAAGA GGACTTACAA GGGACTTGTG AGACAGATCA TGGGCAATAT
  C
  TTTTCTCTCT TACTCAGCTA ACTATCCCTC CACTGTAACG AAGACTCTCT CTTGCACTAG
  TGTCAAGACT ATGAACAGAT GGGCCTCCTG CCCTGCTGGT GAGTAATTCC TCAAGGAGAA
  TTTGTGACTG TGCTGTCCCT GTGTCCTCTC CCATCAATCT CCTAATACCA CCTTCTCCTA
  ACTCCAGTTT GTACTGCCAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148115358	ENSMUSSNP5016412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108686879					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48663898 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	1048 bp downstream
Tssr138681	transcription start site region 138681	955 bp downstream
Tssr138682	transcription start site region 138682	904 bp downstream
Tssr138683	transcription start site region 138683	874 bp downstream
Tssr138684	transcription start site region 138684	840 bp downstream
Tssr138685	transcription start site region 138685	799 bp downstream
Tssr138686	transcription start site region 138686	680 bp downstream
Tssr138687	transcription start site region 138687	638 bp downstream
Tssr138688	transcription start site region 138688	8 bp upstream
Tssr138689	transcription start site region 138689	636 bp upstream
Tssr138690	transcription start site region 138690	694 bp upstream
Tssr138691	transcription start site region 138691	731 bp upstream