rs108687809 SNP Detail

Summary

• ID
  rs108687809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95181383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTAGGAC CGGGTCCAAC
  ACTGTTTCCT ACTTGATATG GGGTCCTGGT TCCTATATAA TGCAAGTGCA GGGCTGGCAG
  GATGGCTCAG TGGGCAAAGG CTGCCAGTCT TGACACCCTA GTTCAGTTCC TAAGACCAAC
  ACAGTGGGAA GAGTTGGGAA TCTTGCCAAG CTGTTCTCTG ACCTTTACAG ATGTGCTTGC
  Y
  GCTGCAAGCT CCCACCCCCC ACCCCCCACA AAATGTATAA ATAAATGTTA AGAGTTTTTA
  TTTTATGGGC TAGAGAGATG GCTCAGGCAT TGTTCTCCAG CTCCAGGGGA CCCTACGCCA
  TCTTCTTGCT TCTGGGGGGC ATCTCTACTC ACATGCATAT TCCCACAGAT AGATACACAC
  GTATACATAT AATTAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135510407	ENSMUSSNP895897	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108687809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95181383 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	315 bp distal
Rr580882	regulatory region 580882	112 bp proximal
Rr580883	regulatory region 580883	571 bp proximal