rs108687880 SNP Detail

Summary

• ID
  rs108687880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84012672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGGCTTC GTGGTTCCTG AATCAGGGGC CATGTCCTCG
  CGCCCGGAAC TGGGCAACAC TCACTCACTT AGACATCCTG CCCCCTCAGT TGCAGGTGAC
  W
  ACTGGAGACT TAGTTTAGGG GTTAACCTAG TATCACCTAT TCCCACAGAT GTCTCTGTGC
  CTAGATTCAG GAAGACCCCA ATCTGGACCC CAGGGAACA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148246488	ENSMUSSNP5270261	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108687880					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84012672 () rs orientation: forward

Symbol	Name	Function Class
Gm33432	predicted gene, 33432	within coordinates
Rr304809	regulatory region 304809	1072 bp distal
Rr304810	regulatory region 304810	729 bp proximal
Rr310902	regulatory region 310902	1184 bp distal
Tssr132442	transcription start site region 132442	1151 bp downstream
Tssr132443	transcription start site region 132443	1137 bp downstream
Tssr132444	transcription start site region 132444	1105 bp downstream