rs108689238 SNP Detail

Summary

• ID
  rs108689238
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:3619507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTGTCA AAGCCAATAT
  TTATTTGGAA TAAGACAAGA AATCACATGA AATAATAAAT ATCCAATAGC AAAATCACAA
  TATAACATCT CCAAATAACA GCCAAATTTT TTTATGATAA ATTTCTTTCA GGTTTTGATA
  TTGATATTAT ATTTATAATA TATTTTATTA TAATCATATA GCTGTGTGAT ATATAATATA
  W
  TATATAATTT ATATATATAT ATGAAGTTGG CTCCTGGATT CTAAGGGATG AATATTTGTG
  TTGCAATTTA CTGATCTAGA TGAAATTTCT ATTGATTTTT ATTATCTACC CTATTATTTT
  TATTTCTTGT TTTTTTGGGG TTTTTTTGTT TTTGTTTTTT CGAGACAGGG TTTCTCTGTA
  TAGCCCTGGC TGTCCTGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397489391	MGP_WTSI_17_3569232	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108689238					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397489391	MGP_WTSI_17_3569232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:3619507 () rs orientation: forward

Symbol	Name	Function Class
Gm34155	predicted gene, 34155	within coordinates
Rr331141	regulatory region 331141	1694 bp proximal