rs108690853 SNP Detail

Summary

• ID
  rs108690853
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57411206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GCGAAGACCA GACCCTATGT
  M
  GAAACAAACA ACTCCCCATT TTATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145810057	ENSMUSSNP1280598	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss325427554	CHEV_17_57243629	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108690853					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57411206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	986 bp proximal
Gm11110	predicted gene 11110	within coordinates
Rr529280	regulatory region 529280	629 bp proximal
Rr529281	regulatory region 529281	1317 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	1119 bp upstream
Tssr145375	transcription start site region 145375	1195 bp upstream
Tssr148901	transcription start site region 148901	1710 bp downstream