rs108692661 SNP Detail

Summary

• ID
  rs108692661
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51462466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGCCTCAAGG TGCATGCATC CATGTCTTAG TCCTTCCCCA
  ACCTACAGGA TTCACCAAGA GCCCTGGCTG GCCTCCAACT TACAACAATC TCTCACCTCA
  G
  GCTCCCAAGT GTGGGTCAGA TTTGATGTTT ATTTATTTGT GAGAATGTAT GCATACTATA
  TATGCCCAGG TAAGCACAAA CCTGGTGCTA ATGTGGAAGC T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135173396	ENSMUSSNP4875877	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108692661					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51462466 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367430	regulatory region 367430			659 bp downstream
Rr576337	regulatory region 576337			259 bp distal
Rr576338	regulatory region 576338			within coordinates
Setd7	SET domain containing (lysine methyltransferase) 7			Intron
				Noncoding-Transcript-Variant
Tssr33221	transcription start site region 33221			985 bp upstream
Tssr33222	transcription start site region 33222			962 bp upstream
Tssr33223	transcription start site region 33223			943 bp upstream