rs108698588 SNP Detail

Summary

• ID
  rs108698588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156311836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGATGTG CCCACAGGGA GGGGATGCCA CCCTTGGTCA
  CGCCAGGCCC CATTTCCCTC TTTATTTCTT TGAGGCAGTA AGGTTTCTAA AGGTGACACC
  Y
  GTCTGTAGAA ATCCCTGGGG CCCCAGAGAC CAGGAGGGGC TGGTTTCCCA GTTTTCCTAG
  GATCCTGTGA GAAAGGTATA CCTTGGGAGT TTGCACCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148128822	ENSMUSSNP280918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321446046	CHEV_4_155601488	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108698588					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156311836 () rs orientation: forward

Symbol	Name	Function Class
Klhl17	kelch-like 17	1956 bp downstream
Plekhn1	pleckstrin homology domain containing, family N member 1	within coordinates
Rr606703	regulatory region 606703	1138 bp proximal
Rr606704	regulatory region 606704	1173 bp proximal
Tssr45022	transcription start site region 45022	1125 bp downstream
Tssr45023	transcription start site region 45023	1161 bp downstream
Tssr45024	transcription start site region 45024	1416 bp downstream