rs108699920 SNP Detail

Summary

• ID
  rs108699920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTATG TGTAAAAGAC AGAGAGAGAG GAAGAGAGAG AGTGTCAGAG GTGAGGAACA
  CTGTAACAGA CTACATGAGG GAGATTATGT ATGAAATCGG CCATAGGTGC ATGAGGGAGA
  TTGTATCTGA CAGGTTTTTA ATGCATGTGA GAGCCCATGT GTGATTGTGT GTGAGTAACT
  R
  TACACACACA CACATACACA CACTTAGATG TTGTGTTTAG TGTGTGTGTG TGTGTGTGTG
  TGTGAGAGAG AGAGAGAGAG AGAGAGAGAA GGAGGAGGAG GAGGAGGAAG TTATGTGTTG
  TGAGAAAGTG TGTGTAAGAA ACATTGTAAC AGACTGTAAC CAAGTGCTTA CAGGAGATTA
  TATGAAAAAG ACCATTAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135874469	ENSMUSSNP2432194	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957995	CHEV_3_127599751	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108699920					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	310 bp distal
Fam241a	family with sequence similarity 241, member A	510 bp upstream
Rr398009	regulatory region 398009	260 bp downstream
Rr584896	regulatory region 584896	814 bp distal
Rr584897	regulatory region 584897	19 bp distal
Tssr35607	transcription start site region 35607	1320 bp upstream
Tssr35608	transcription start site region 35608	600 bp upstream
Tssr35609	transcription start site region 35609	563 bp upstream
Tssr35610	transcription start site region 35610	496 bp upstream