rs108700557 SNP Detail

Summary

• ID
  rs108700557
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9621027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTAATATTGA TCCTAAAATA CTTTGTAAGT TACCAAATGA
  AAGGTGATTC AAAAGACCCA ATAATGCTAG GAATATTTTT ACAAAACTGT GTTTTGTTTT
  A
  TTTTGTTTTG TTTTGTTTTG AAATTATGAT TTGAAATGTT GATTATAAGG TGTGTTTAGA
  AATTTTGTTT AGTTATTTGG TTTTCCTGGA GTCAAATGCA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146597872	ENSMUSSNP187063	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108700557					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9621027 () rs orientation: forward

Symbol	Name	Function Class
Cetn1	centrin 1	1558 bp upstream
Cpgi9693	CpG island 9693	1443 bp distal
Gm58470	predicted gene, 58470	1532 bp downstream
Tssr152399	transcription start site region 152399	1593 bp upstream
Tssr152400	transcription start site region 152400	1575 bp upstream
Tssr152401	transcription start site region 152401	1545 bp upstream