rs108702702 SNP Detail

Summary

• ID
  rs108702702
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88863424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCACCCTGGC AATTACAGCA ACAATTTCTT TGTGCACATT
  GCAAAAAAGG CTCAGCCCAG AGTACTTGGG AAACAAAACA AAACAAAACA AAAAACCAAC
  C
  CCCCCCCCCC CAGCTCCTTT GAACAGCAGA ACCCCACGCA GCCTAGGCTC AGCCACTGGT
  TTCTAATCAG GGATGGTTGG TTATCTTAGC TTGTCAACCA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148329558	ENSMUSSNP5405954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108702702					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88863424 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	800 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	232 bp upstream
Rr507763	regulatory region 507763	225 bp distal
Rr507764	regulatory region 507764	within coordinates
Tssr135826	transcription start site region 135826	1362 bp upstream
Tssr135827	transcription start site region 135827	1272 bp upstream
Tssr135828	transcription start site region 135828	657 bp upstream
Tssr135829	transcription start site region 135829	624 bp upstream
Tssr135830	transcription start site region 135830	412 bp upstream
Tssr135831	transcription start site region 135831	229 bp upstream
Tssr135832	transcription start site region 135832	1203 bp downstream