rs108704035 SNP Detail

Summary

• ID
  rs108704035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTGTCCCATG GTGTGACATA ATGCTGCATG TGAAATACAC
  GCATGTACTC AAAACCAGTG TTGCAGTGAA GTCATGTGAT ACAACACAGG CAATAACCAT
  Y
  GCAAACACCT TGTATTAATT TTACATTTGA TTTGGAATTC AATTTTGGTC ATAGTGAATT
  CATGAGCCAT ATAATGTTTT TTGTTTTGTT TTGTTTAAAA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245721	ENSMUSSNP2747401	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108704035					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876919 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	844 bp downstream
Rr562815	regulatory region 562815	728 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1124 bp downstream
Tssr601	transcription start site region 601	1134 bp downstream
Tssr19429	transcription start site region 19429	846 bp upstream
Tssr19430	transcription start site region 19430	941 bp upstream
Tssr19431	transcription start site region 19431	1021 bp upstream
Tssr19432	transcription start site region 19432	1117 bp upstream
Tssr19433	transcription start site region 19433	1683 bp upstream
Tssr19434	transcription start site region 19434	1736 bp upstream
Tssr25660	transcription start site region 25660	873 bp downstream
Tssr25661	transcription start site region 25661	890 bp downstream
Tssr25662	transcription start site region 25662	947 bp downstream
Tssr25663	transcription start site region 25663	1010 bp downstream
Tssr25664	transcription start site region 25664	1040 bp downstream
Tssr25665	transcription start site region 25665	1148 bp downstream
Tssr25666	transcription start site region 25666	1715 bp downstream
Tssr25667	transcription start site region 25667	1742 bp downstream
Tssr25668	transcription start site region 25668	1778 bp downstream
Tssr25669	transcription start site region 25669	1807 bp downstream