rs108709739 SNP Detail

Summary

• ID
  rs108709739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA TATAGTTCTT CTCTTTGCTC
  S
  TCTTACCCCC AGCCCCACCC CCACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007371	PARCsnp_1.17764	PARC_SEQ	INBRED	f	SNP		C	G
ss120010272	PARCsnp_1.07403	PARC_SEQ	INBRED	f	SNP		C	G
ss146183873	ENSMUSSNP2627029	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320123211	CHEV_1_174137882	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs108709739					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	798 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1020 bp upstream
Rr396578	regulatory region 396578	211 bp downstream
Rr423485	regulatory region 423485	958 bp distal
Rr423486	regulatory region 423486	457 bp distal
Tssr294	transcription start site region 294	1118 bp upstream
Tssr295	transcription start site region 295	1068 bp upstream
Tssr296	transcription start site region 296	992 bp upstream
Tssr297	transcription start site region 297	958 bp upstream
Tssr15164	transcription start site region 15164	1086 bp upstream
Tssr15165	transcription start site region 15165	996 bp upstream
Tssr15166	transcription start site region 15166	965 bp upstream
Tssr15167	transcription start site region 15167	45 bp upstream