rs108712918 SNP Detail

Summary

• ID
  rs108712918
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143906487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTGCAC CGGGATCTTG
  GGCAGCATTC ACCAGCCACA GATAAGGCCA ACCACAACAG CAGGGTTAAA CTTTGAATAA
  AATATCCCAC CCACTGATTT AACAGCTTCA GGAAGATCAC TATACAGACA AAGGTTCAGA
  ACAGACACTT AAATAGAAGG AAAGTCTTCT TTTCTCTCTC TCTCTAGTGG TATTGGTGTG
  G
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGGTTT TTTTTTTTTT TTAATTACTG
  GATGTTGAAA CAGAACACCT CCTAGAAGCA TTCAAGTGCG ACAGTCTATC AAACCATTTA
  CTCAAATTAA ATGTGTAATC CTTCAAATGC CTCCTTTCAA ATTAATGAGT TTAAGTAGCT
  TGAGTTCACC TGAAAAGATC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136029265	ENSMUSSNP2430717	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108712918					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143906487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	1713 bp distal
Cpgi13894	CpG island 13894	1085 bp proximal
Gm43445	predicted gene 43445	1464 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	53 bp downstream
Rr586595	regulatory region 586595	1475 bp distal
Rr586597	regulatory region 586597	974 bp distal
Rr586598	regulatory region 586598	113 bp distal
Rr586599	regulatory region 586599	1259 bp proximal
Rr586600	regulatory region 586600	1596 bp proximal
Tssr35961	transcription start site region 35961	1336 bp upstream
Tssr35962	transcription start site region 35962	201 bp downstream
Tssr35963	transcription start site region 35963	1189 bp downstream
Tssr35964	transcription start site region 35964	1236 bp downstream
Tssr35965	transcription start site region 35965	1574 bp downstream
Tssr35966	transcription start site region 35966	1624 bp downstream
Tssr35967	transcription start site region 35967	1853 bp downstream