rs108713189 SNP Detail

Summary

• ID
  rs108713189
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24660810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGGGAT GAGCCATTTA
  AACACCTCAC TGCTTCGAAG GCGGATCGAT GGCCAGTCAT GCGCCTTCAC GTACTTGCAA
  TCGGCATTAA AGTCACCCAG AAACAGCATG TCCTGTAGGC AAGCACAGCC AGTACATCTT
  AGCAGTGCTC AGTAGTCCAG ACCTCTGAGA ACACTTGTGG TCTGGGACGT GAGTTGGGGG
  B
  GGGGGGGGGG GTGTTGCCTA CATCAGTGTT CCACTTGTCA ATGACATCAA GGTACACATC
  GTAGAGCGCG TCGATCTCTG CCACCGCCTG GTGTGGTGCT GCATGGAGGG GGATCAGCAC
  CAGCTCCTTG GTGGCTGTGG AAGGTGGGGG GATATGAGGG TCAAGGGAAG CCTGGAAGAG
  GTAGGCTTGT CTGGGAGAGG                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397856359	MGP_WTSI_17_24578781	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108713189					SNP	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397856359	MGP_WTSI_17_24578781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24660810 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
E4f1	E4F transcription factor 1	1942 bp downstream
Rr329769	regulatory region 329769	210 bp distal
Rr337043	regulatory region 337043	1907 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	1437 bp upstream
Tssr146731	transcription start site region 146731	321 bp downstream
Tssr146732	transcription start site region 146732	1241 bp downstream
Tssr146733	transcription start site region 146733	1257 bp downstream