rs108713867 SNP Detail

Summary

• ID
  rs108713867
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:54792179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCCAG CAACTGCACT
  TGGAGCAGAC AGACAGATGG GCAGGCAAAA GAGCTCATAC AGAGTAAATA AAAAATAAGC
  AAAAAATGTA ATAAAAATTT TCAGAATACT CACTCCTTTC TGCTCCTAAA GCGACCACCT
  TTTTAAAAAC AAAATAACCT ACGGGTAAGA GAACTGCTGT ATCCTTTGTC CCTCTTCCAT
  C
  TCTCGGCTAT TACACACCTT CACATTTCTG AAGCACGGCA CCAACATTTA TTAGTCCTCA
  CAACATCCCT GTGAGGTAGG TCAACATGTC CTTTATAGCA GAGAATGGAG AAGCCAGAAG
  AGGCTCTTGC CCATACCGGA TTGAGGCTTC AAGAGCAGCT GGTGAGGGTG GGAGGGAATC
  CAGAAGCAAG GGCCCTTGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137771141	ENSMUSSNP5922499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108713867					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:54792179 () rs orientation: forward

Symbol	Name	Function Class
Rr260899	regulatory region 260899	579 bp distal
Rr260900	regulatory region 260900	1022 bp proximal
Rr263772	regulatory region 263772	1155 bp distal
Snx6	sorting nexin 6	945 bp downstream