rs108714116 SNP Detail

Summary

• ID
  rs108714116
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78134737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCA CCTTGACAGT GGTTTCTCTG
  G
  ACTGGGTGGT TGCTGATATT TGCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148180815	ENSMUSSNP3523669	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325024224	CHEV_15_78080967	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108714116					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78134737 () rs orientation: forward

Symbol	Name	Function Class
Ncf4	neutrophil cytosolic factor 4	within coordinates
Rr505231	regulatory region 505231	1666 bp distal
Rr505232	regulatory region 505232	1272 bp proximal
Rr505233	regulatory region 505233	1380 bp proximal
Tssr131902	transcription start site region 131902	78 bp upstream
Tssr131903	transcription start site region 131903	351 bp upstream