rs108718756 SNP Detail

Summary

• ID
  rs108718756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47817251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCTGAA ATCCCAATTG
  GATGTGGCTG AATGGGCCCA GCCGGGCATG ATAGACCAGT CCATACCATA CTGGACACCC
  ACTCCCCATC CTGGACCCTG GGACAACAAG CCTTGTCCTG TGCCTGTCAC CACAGTGTCC
  TCTGGGACTA GTCCCCCATA TAGAAGTGGT TCTGCTGCTG CTGCCTGGCA CTGCCTAGCA
  Y
  AGCAGGCTAC CAACTCATTG GACCCTTTTC CCTCTGCCAG TGTTGGGGAC ATTGTGGAAT
  GAGATCAGAG TTTCTAGCTA CAGAGACTTG AGATGGGAAG TGTCTCTGAT CATTCCGTCA
  CGGCATCAGT CTGTGCTCAA TCCTTGAACC CGTGGTCATG GCTCCCACGG TTGTGTTTCT
  ATTGCTCAAG GACTTGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398348104	MGP_WTSI_17_47643275	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108718756					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	C	T	T	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398348104	MGP_WTSI_17_47643275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47817251 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Cpgi9262	CpG island 9262	981 bp distal
Rr370265	regulatory region 370265	1645 bp downstream
Rr370266	regulatory region 370266	1178 bp downstream
Rr370267	regulatory region 370267	1638 bp upstream
Rr528023	regulatory region 528023	1167 bp distal
Rr528024	regulatory region 528024	425 bp distal
Rr528025	regulatory region 528025	696 bp proximal
Tssr144917	transcription start site region 144917	1482 bp downstream
Tssr144918	transcription start site region 144918	1366 bp downstream
Tssr144919	transcription start site region 144919	1260 bp downstream
Tssr144920	transcription start site region 144920	1242 bp downstream
Tssr144921	transcription start site region 144921	1221 bp downstream
Tssr144922	transcription start site region 144922	1194 bp downstream
Tssr144923	transcription start site region 144923	1162 bp downstream
Tssr144924	transcription start site region 144924	1144 bp downstream
Tssr144925	transcription start site region 144925	1121 bp downstream
Tssr144926	transcription start site region 144926	1098 bp downstream
Tssr144927	transcription start site region 144927	1961 bp upstream
Tssr148442	transcription start site region 148442	1660 bp downstream